Flow Panel Designer
Fluorophore selection optimizer.
Use Cases
- Multicolor panel design (10+ colors)
- Compensation planning
- Marker-fluorophore matching
- Spectral flow setup
Parameters
| Parameter | Type | Default | Required | Description |
|---|---|---|---|---|
--markers |
string | - | Yes | Comma-separated target antigens |
--instrument |
string | - | No | Cytometer model |
--n-colors |
int | 8 | No | Number of fluorophores |
--output, -o |
string | stdout | No | Output file path |
Returns
- Optimal fluorophore assignments
- Spillover predictions
- Compensation control list
- Panel validation checks
Example
T-cell panel: CD3-BV421, CD4-FITC, CD8-PE...
Risk Assessment
| Risk Indicator | Assessment | Level |
|---|---|---|
| Code Execution | Python/R scripts executed locally | Medium |
| Network Access | No external API calls | Low |
| File System Access | Read input files, write output files | Medium |
| Instruction Tampering | Standard prompt guidelines | Low |
| Data Exposure | Output files saved to workspace | Low |
Security Checklist
- No hardcoded credentials or API keys
- No unauthorized file system access (../)
- Output does not expose sensitive information
- Prompt injection protections in place
- Input file paths validated (no ../ traversal)
- Output directory restricted to workspace
- Script execution in sandboxed environment
- Error messages sanitized (no stack traces exposed)
- Dependencies audited
Prerequisites
No additional Python packages required.
Evaluation Criteria
Success Metrics
- Successfully executes main functionality
- Output meets quality standards
- Handles edge cases gracefully
- Performance is acceptable
Test Cases
- Basic Functionality: Standard input → Expected output
- Edge Case: Invalid input → Graceful error handling
- Performance: Large dataset → Acceptable processing time
Lifecycle Status
- Current Stage: Draft
- Next Review Date: 2026-03-06
- Known Issues: None
- Planned Improvements:
- Performance optimization
- Additional feature support